Project description
We aim to enable near real time computation of the high-fidelity multiphase and multiscale simulation of tumor growth in human liver via data-driven surrogate models. This will allow patient-specific prognosis in clinical environments. We will design hybrid data- and knowledge-driven surrogate models for ODE, PDE, and coupled PDE-ODE models. To improve the coupling performance, we will focus on efficient coupling using preCICE. Finally, we will enable individualization of the simulation by developing a pathway to incorporate relevant patient data (individual tumor volume, preconditions or blood pressure) in close collaboration with clinical partners from Jena University Hospital. Patient-specific model parameters are generally subject to aleatory uncertainty. To estimate the confidence interval in the prognosis via the surrogates, Bayesian neural networks (BNNs) will be applied.
Project information
| Project number | PN 2-2 (II) |
| Project title | Data-enhanced prediction of organ-specific tumor growth in the liver - a hybrid knowledge and data-driven approach |
| Project duration | June 2023 - December 2025 |
| Project leaders | Tim Ricken (Benjamin Uekermann) |
| Project staff |
Navina Waschinsky, doctoral researcher |
| Project partners |
Prof. Nicole Radde (PN2) |
- Preceding project 2-2 A
Data and model driven multiscale simulation of tumor growth in liver cell, tissue and organ
Publications PN 2-2 A and PN 2-2 (II)
2024
- S. M. Seyedpour, M. Azhdari, L. Lambers, T. Ricken, and G. Rezazadeh, “One-dimensional thermomechanical bio-heating analysis of viscoelastic tissue to laser radiation shapes,” International Journal of Heat and Mass Transfer, vol. 218, p. 124747, 2024, doi: https://doi.org/10.1016/j.ijheatmasstransfer.2023.124747.
2023
- S. M. Seyedpour, L. Lambers, G. Rezazadeh, and T. Ricken, “Mathematical modelling of the dynamic response of an implantable enhanced capacitive glaucoma pressure sensor,” Measurement: Sensors, p. 100936, 2023, doi: https://doi.org/10.1016/j.measen.2023.100936.
- M. Azhdari et al., “Non-local three phase lag bio thermal modeling of skin tissue and experimental evaluation,” International Communications in Heat and Mass Transfer, vol. 149, p. 107146, 2023, doi: https://doi.org/10.1016/j.icheatmasstransfer.2023.107146.
- L. Mandl, A. Mielke, S. M. Seyedpour, and T. Ricken, “Affine transformations accelerate the training of physics-informed neural networks of a one-dimensional consolidation problem,” Scientific Reports, vol. 13, Art. no. 1, 2023, doi: 10.1038/s41598-023-42141-x.
2022
- F. Bertrand, M. Brodbeck, and T. Ricken, “On robust discretization methods for poroelastic problems: Numerical examples and counter-examples,” Examples and Counterexamples, vol. 2, p. 100087, Nov. 2022, doi: 10.1016/j.exco.2022.100087.
2021
- A. Armiti-Juber and T. Ricken, “Model order reduction for deformable porous materials in thin domains via asymptotic analysis,” Archive of Applied Mechanics, 2021, doi: 10.1007/s00419-021-01907-3.
- S. M. Seyedpour et al., “Application of Magnetic Resonance Imaging in Liver Biomechanics: A Systematic Review,” Frontiers in Physiology, vol. 12, Sep. 2021, doi: 10.3389/fphys.2021.733393.
- B. Christ et al., “Hepatectomy-Induced Alterations in Hepatic Perfusion and Function - Toward Multi-Scale Computational Modeling for a Better Prediction of Post-hepatectomy Liver Function,” Frontiers in Physiology, vol. 12, Nov. 2021, doi: 10.3389/fphys.2021.733868.